Online Tools

• Compute Significant subnetworks and hub proteins in high-grade serious ovarian cancer (HGSOC).

• Computing tool for automatically clustering unclassified ovarian tumor samples.

RNA-Seq & WES-Seq Pipelines

Instruction

The two pipelines are packaged in Docker images with all the required tools pre-installed. You can download the image within Docker and then run it. The pipeline can run on any local operating system. The instructions in this document assume the pipeline running on Linux system.

Install Docker

Docker is available for Mac, Window and Linux

For MAC or Windows users:https://www.docker.com/products/docker-toolbox

For Linux users: (Ubuntu and Centos)
Ubuntu: https://docs.docker.com/engine/installation/linux/ubuntulinux/
Centos : https://docs.docker.com/engine/installation/linux/centos/

For more detail about Docker please visit :https://docs.docker.com/

Load Docker image into a directory

The image of RNAseq pipeline is named as ualrngs/rna-seq-pipeline. Open a terminal and download the image into your computer by typing the following command

Load the image for RNA-Seq:docker pull ualrngs/rna-seq-pipeline:2.0

Load the image for WES-Seq:docker pull ualrngs/wes-seq-pipeline:0.1

Check the image by typing: docker images

Documents

How to use our RNA-Seq Pipeline : RNASeq_Pipeline.pdf